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Centrifuge is a device that applies centrifugal force to separate mixture in the fluid by putting an object in rotational movement around a fixed axis thereby separating fluids of different densities or liquid from solids.

Centrifuge is a relatively simple instrument but yet tricky to maintain. Most of the centrifuge related blunders are due to user handling error and many machines have been destroyed by the scientists who are in it for simple pelleting. Therefore, it is crucial to understand what we do during centrifugation and avoid damaging the instrument and it’s in for the prolonged stay in the lab


Centrifugation produces centrifugal force to effectively separate and sediment the sample component based on size and density. Rotors spin very rapidly generating extreme force and therefore it is crucial to properly balance rotors during spin especially when rotors are loaded partially with tubes and plates. Any imbalance in the rotor including placement of the centrifuge on an uneven or slanted work surface can cause abnormal vibration that can in turn damage the rotor. An unbalanced centrifuge is as dangerous as unstable chemical reaction and can start domino effect of catastrophes all the way from instrument failure, to sample breakage, user injury and overall large-scale destruction in the laboratory and can be major safety hazard in the laboratory environment

Precise balancing at high speed becomes more crucial as the centrifugal force generated during centrifugation is directly proportional to sample mass and acceleration. At higher RCF even slight change in sample mass can lead to substantial force imbalance which in turn could be a catastrophe.

It doesn’t matter if the centrifuge has a fixed angle or swing bucket rotor, two important factors to consider when balancing include sample volume and symmetrical arrangement of tubes. It is important to ensure that the sample volumes are equal in all tubes and the tubes are placed directly opposite each other in the centrifuge. If the solution is not of similar density (eg acetone and water), tubes should be equal mass rather than volume to be correctly balanced. In the case of a swing bucket rotor it is to make sure that all slots contain a rotor bucket appropriate to the machine and are of the same weight.

Time, Speed and centrifugation

The choice of centrifugation speed depends on the size of the particle in the sample, smaller the particle size higher centrifugation speed for example bacterial cells are pelleted at higher speeds (2000-10000 g) than mammalian cells. Relative centrifugal force (RCF) generated by a spinning rotor is expressed relative to earth's gravitational force and therefore is also known as G-force . The G force acting on a particle is exponential to the speed of rotation due to this square dependence of RCF in RPM, centrifugation speed of 10000RPM for 5 minutes and 500 RPM for 10 minutes are not interchangeable. The former produces a much larger RCF than the latter. RCF is proportional to the radius of the rotor and to the square of RPM

RPM and RCF are not the same

RPM (Revolution per minutes) and RCF (Relative centrifugal force or g-force) are commonly used to describe centrifugal speed. RCF refers to the acceleration applied to your sample for example 10,000 g means 10,000 times earth’s gravitational force. RPM is not a useful unit because the force varies with radius of the machine (Bigger the radius, the more acceleration is applied to your sample for the same RPM) therefore RPM speed setting needs to be converted to RCF to ensure that the correct centrifugal force is applied.

Centrifugation and the temperature

Centrifugation generates heat because of the movement of molecules and friction with air which in turn can increase the temperature within a centrifuge which can affect stability of the sample. Temperature inside the centrifuge is primarily influenced by three factors: Rotor material, Rotor shape and speed of rotation.

Rotor materials such as steel and aluminium have a high density and high thermal conductivity which means it can transfer heat efficiently and get chilled quickly. Material like polymer and carbon fibre are low density material (Heat Insulator) and helps in maintaining constant temperature.

Rotor Shape determines the airflow within a centrifuge. Optimizing the airflow within a centrifuge through rotor shape is essential to maintaining the temperature.

Speed of Centrifuge, Centrifugation is proportional to the rise in temperature – at higher speed, more heat is generated. The degree of warming is very much depending on the maximum speed and shape of the rotor. It is important to understand the maximum speed of the centrifuge and the range of speed that maintains the temperature range that will not change the outcome of the experiment. This information is supplied by the manufacturer to help users understand the limitation and work around it.

Acceleration and Deceleration

Many Centrifuge offers the option to control deceleration setting (brakes) to bring it to stop faster and what is the effect on sample outcome.

Braking can be particularly useful during centrifugation involving Nucleic acid extraction or bacterial cell pelleting which are not affected by sudden stopping. Experiments that are more sensitive to abrupt deceleration such as isolation of peripheral blood mononuclear cells and gradient centrifugation, braking can cause separated layers to remix.

The Interphase separation of peripheral blood mononuclear cells (PBMC) is very sensitive to vibration and too fast acceleration or deceleration would disturb the gradient and lead to a milky/Non-existent interphase, making it difficult to extract PBMC. To prevent remixing the protocol requires acceleration/deceleration be shut off completely so that the centrifuge accelerates slowly and high forces cannot disturb the gradient and accumulate in the appropriate phase according to their density. When the brake is shut off, the centrifuge simply runs down until the rotor stops by itself.

Thus, centrifuge with different Acceleration/Deceleration ramps offers users the option of adjusting acceleration and deceleration speed and optimizing their protocols quite easily

Know where your pellet is?

One of the applications of centrifuge is to pellet down bacterial cells, mammalian cells or nucleic acid. Angle of rotor determines the position of pellet. To Ensure and know where your pellet is, a good lab practice is to always spin the tube with lid hinges placed in the same orientation (for example lid hinges facing outward). In the case of a swing rotor, the pellets are formed at the bottom of the tube.

Hope this article will help you in choosing the right centrifuge product which custom fits your application.

Original Source: https://neuation.com/guide-to-centrifugation/

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